On this page you can find useful links concerning MD simulations, protein and DNA structures and more.


EPCES: Prediction of Antigenic Epitopes on Protein Surfaces by Consensus Scoring




Human genome project information

Bioinform - The Global Bioinformatics News Service

Biotechfind search engine

BCM-HGSC Baylor College of Medicine Human Genome Sequencing Center


Three dimensional structure


The Nucleic Acid Database

The RCSB Protein Data Bank

The IMB Jena Image Library of Biological Macromolecules

Structural Classification of Proteins - CATH

The BioMagResBank

Cambridge Crystallographic Data Centre

Protein Structure Prediction Center

NCI Drug Information System 3D Database

SWISS-MODEL: a database for theoretical protein models

Molecular Structures at the Indinana University Molecular Structure Center (IUMSC)



Gene/Genome related databases


Database of Expressed Sequence Tags - EST

TIGR Microbial Database

euGENES (Genomic Information for Eukaryotic Organisms)

MGBD - Microbial Genome Database for Comparative Analysis

COG - Clusters of Orthologous Groups of Proteins

Human Genome Resources (NCBI)


Basic Sequence analysis


The Protein Machine (Translation of a nucleotide (DNA/RNA) sequence to an amino acid sequence - EBI)

WebLogo (Displays consensus information of sequence sets)

Translate (Translation of a nucleotide (DNA/RNA) sequence to an amino acid sequence - ExPASy)




PIR - International Protein Sequence Database

SWISS-PROT Protein Sequence Database


Secondary Structure Prediction


PredictProtein (EMBL Heidelberg)


Sequence Comparison


MPsearch (EBI)

BLAST (Basic Local Alignment Search Tool at NCBI)


Pattern Searches


PROSITE (Dictionary of protein sites and patterns)

PRODOM (The Protein Domain Database)

Pfam (Comprehensive collection of protein domain families)

BLOCKS Server (Identification of multiply aligned ungapped sequence segments)

PRINTS (Protein Motif Fingerprint Database)